SweetGAINS Data Download

Ipomoea batatas New Kawogo Genome Assembly and Annotation - Version 2

SweetGAINS Genome Data Release Policy

PLEASE READ BEFORE ACCESSING THE PRE-PUBLICATION IPOMOEA BATATAS New Kawogo GENOME SEQUENCE DATA:

The SweetGAINS Project is pleased to make available the pre-publication I. batatas New Kawogo genome sequence for use by public and private research communities as a resource to facilitate plant biology discoveries and plant breeding programs.

This pre-publication I. batatas New Kawogo genome data is made available with the understanding that users will respect the rights of those who contributed to this effort to describe the I. batatas New Kawogo genome in a peer-reviewed publication. By accessing these data, users agree not to publish any articles containing analyses of genes or genomic data on a whole genome or chromosome scale prior to publication of the genome by SweetGAINS. The restricted analyses include the identification of complete sets of genomic features such as genes, gene families, regulatory elements, repeat structures, etc., and whole-genome comparisons of regions of evolutionary conservation or change. Studies of any type on the reserved data sets that are not in direct competition with those planned by SweetGAINS may be undertaken following an agreement. Interested parties are encouraged to contact Dr. Zhangjun Fei zf25@cornell.edu to discuss such possibilities.

The data may be freely used by all who respect the restrictions described above. Any use of the I. batatas New Kawogo genome data prior to its publication should credit the SweetGAINS Project. Once moved to publication status, the I. batatas New Kawogo genome data is freely available for any subsequent use.

The I. batatas New Kawogo genome sequencing is primarily supported by Bill & Melinda Gates Foundation through the SweetGAINS project.

The SweetGAINS Project Genome Data Release Policy - PDF Download

Zhangjun Fei (Boyce Thompson Institute/Cornell) has sequenced I. batatas New Kawogo and created a haplotype-resolved chromosome-scale genome assembly (version 2). The genome assembly has been annotated by Robin Buell and her group at the University of Georgia.

Release Date: February 1, 2024:

Ipomoea batatas New Kawogo Genome Assembly (v2) JBrowse

GT4SP Project BLAST Server (opens in new window/tab)

Genome Assembly

Ipomoea batatas New Kawogo Genome Assembly (v2) - FASTA format
Ipomoea batatas New Kawogo Hard Masked Genome Assembly (v2) - FASTA format
Ipomoea batatas New Kawogo Soft Masked Genome Assembly (v2) - FASTA format

Genome Annotation

Ipomoea batatas New Kawogo Genome Annotation - High Confidence Gene Model Set

NewKawogo_v2.hc_gene_models.cdna.fa.gz - Nucleotide sequences of the high confidence gene model transcript sequences (cDNA).
NewKawogo_v2.hc_gene_models.cds.fa.gz - Nucleotide sequences of the high confidence gene model coding sequences (CDS).
NewKawogo_v2.hc_gene_models.pep.fa.gz - Amino acid sequences corresponding to the high confidence gene model coding sequences
NewKawogo_v2.hc_gene_models.gff3.gz - High confidence gene model annotation in GFF3 format

Ipomoea batatas New Kawogo Genome Annotation - Representative High Confidence Gene Model Set (longest CDS)

NewKawogo_v2.hc_gene_models.repr.cdna.fa.gz - Nucleotide sequences of the representative high confidence gene model transcript sequences (cDNA).
NewKawogo_v2.hc_gene_models.repr.cds.fa.gz - Nucleotide sequences of the representative high confidence gene model coding sequences (CDS).
NewKawogo_v2.hc_gene_models.repr.pep.fa.gz - Amino acid sequences corresponding to the representative high confidence gene model coding sequences
NewKawogo_v2.hc_gene_models.repr.gff3.gz - Representative high confidence gene model annotation in GFF3 format

Ipomoea batatas New Kawogo Genome Annotation - Working Gene Model Set
Note: The following working set annotations contain both high confidence gene models and low confidence gene models (e.g. gene predictions with insufficient evidence support, partial gene models, TE-related gene models, etc.).

NewKawogo_v2.working_models.cdna.fa.gz - Nucleotide sequences of the working gene model transcript sequences (cDNA).
NewKawogo_v2.working_models.cds.fa.gz - Nucleotide sequences of the working gene model coding sequences (CDS).
NewKawogo_v2.working_models.pep.fa.gz - Amino acid sequences corresponding to the working gene model coding sequences
NewKawogo_v2.working_models.gff3.gz - Working gene model annotation in GFF3 format
NewKawogo_v2.functional_annotation.txt.gz - Putative functional annotation of working gene model set

Contact:

Dr. C. Robin Buell, University of Georgia - Robin.Buell@uga.edu

This site has been tested on IE 10+, Chrome, Safari and Firefox.

Funding has been provided by awards from the Bill & Melinda Gates Foundation. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the Bill & Melinda Gates Foundation.

Web template provided by Design By Darren. Photos courtesy of Wikimedia Commons.