Zhangjun Fei (Boyce Thompson Institute/Cornell) has sequenced I. batatas New Kawogo and created a consensus chromosome-scale genome assembly (version 1). The genome assembly has been annotated by Robin Buell and her group at the University of Georgia.

Release Date: November 20, 2024:

Genome Assembly:

• NewKawogo_con_v1.asm.fa.gz - Genome assembly for New Kawogo Consensus - v1
• NewKawogo_con_v1.asm.hm.fa.gz - Masked genome assembly for New Kawogo Consensus - v1
• NewKawogo_con_v1.asm.sm.fa.gz - Soft masked genome assembly for New Kawogo Consensus - v1

Genome Annotation:

• High Confidence Gene Model Set
• NewKawogo_con_v1.hc_gene_models.cdna.fa.gz - Transcript sequences (cDNA) of the high confidence gene models
• NewKawogo_con_v1.hc_gene_models.cds.fa.gz - Coding sequences (CDS) of the high confidence gene models
• NewKawogo_con_v1.hc_gene_models.pep.fa.gz - Protein sequences of the high confidence gene models
• NewKawogo_con_v1.hc_gene_models.gff3.gz - High confidence gene models annotation in GFF3 format


• Representative High Confidence Gene Model Set

High confidence representative gene models are a subset of the high confidence gene model set. Each representative gene model is the isoform with the longest CDS at each locus.

• NewKawogo_con_v1.hc_gene_models.repr.cdna.fa.gz - Transcript sequences (cDNA) of the the representative high confidence gene models
• NewKawogo_con_v1.hc_gene_models.repr.cds.fa.gz - Coding sequences (CDS) of the representative high confidence gene models
• NewKawogo_con_v1.hc_gene_models.repr.pep.fa.gz - Protein sequences of the representative high confidence gene models
• NewKawogo_con_v1.hc_gene_models.repr.gff3.gz - Representative high confidence gene models annotation in GFF3 format


• Working Gene Model Set

The set of working gene models contains all loci and isoforms from the annotation pipeline and may include artifacts such as partial gene models.

• NewKawogo_con_v1.working_models.cdna.fa.gz - Transcript sequences (cDNA) of the working gene models
• NewKawogo_con_v1.working_models.cds.fa.gz - Coding sequences (CDS) of the working gene models
• NewKawogo_con_v1.working_models.pep.fa.gz - Protein sequences of the working gene models
• NewKawogo_con_v1.working_models.gff3.gz - Working gene models annotation in GFF3 format
• NewKawogo_con_v1.functional_annotation.txt.gz - Functional annotation for the working gene models


• Representative Working Gene Model Set

The representative working gene models are a subset of the working gene model set. Each representative gene model is the isoform with the longest CDS at each locus.

• NewKawogo_con_v1.working_models.repr.cdna.fa.gz - Transcript sequences (cDNA) of the representative working gene models
• NewKawogo_con_v1.working_models.repr.cds.fa.gz - Coding sequences (CDS) of the representative working gene models
• NewKawogo_con_v1.working_models.repr.pep.fa.gz - Protein sequences of the representative working gene models

Contact:

Dr. C. Robin Buell, University of Georgia - Robin.Buell@uga.edu

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Funding has been provided by awards from the Bill & Melinda Gates Foundation. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the Bill & Melinda Gates Foundation.

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